Scaffold Ga0209645_1002207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1002207

Scaffold Ga0209645_1002207

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1002207 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9378
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10022072	F022875	N/A	MNLTEETKENIRVRAKAHINSTDPSTDHWDSIETPDGFVDFNIWQDDDYRNGEWIVTCYDTYCSTDDGYLCTDTSTFKRIAL
Ga0209645_10022073	F009459	AGGA	MTNREITLEPSVMIEELMFYIHQNEMGGDCIDPDNRFFPLYLELQKLLDKLNNERHDLYVSVKNDETK
Ga0209645_10022074	F048912	N/A	MRDYDSWLTSFLDYEDDDGLTDEERQELKDLYDEWVIDQYETNKQTID

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