NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1003458

Scaffold Ga0209645_1003458


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1003458 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7194
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F074857Metagenome119Y
F087434Metagenome110N
F103174Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100345810F074857AGGAGMNVPTNYRPKRLSFRAIAEQAQKLSEMAYLEACQPKELQNQVLMDHCYKQAKLLTNRLVNAGYWQKSKVSLG
Ga0209645_100345811F032640GAGGMRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIAEFDPYVNEIIVKDGGYQTVTTKSRINALLYGWAKGNPSISQRKWVWHLDTVCPLTKDRKSQEFQGVARFPLKVWR
Ga0209645_100345812F087434GAGGMEHKGMKYMEAHKRWISQAKELIPQVPDFKGDFVKSLNERIDSGIPLTPKQFKSLKKVVWYLKKQTEKS
Ga0209645_100345816F073494AGGMVSDKVWESNEISMWVNNDESLHQLARSSWDAWHFFKTLEMIGVYELGGIKLTPQNVKESWEDAND
Ga0209645_10034587F103174GAGGMFMNLKIKPKVGDLVRVNDPYFDDDTCGYCIESEEKFFTLRYFDDASRQYDFEYWYEEDYDLEMSIISST
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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