NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1007973

Scaffold Ga0209645_1007973


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1007973 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4397
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037741Metagenome / Metatranscriptome167Y
F058164Metagenome / Metatranscriptome135N
F088824Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10079731F088824GAGMGEILLMLLTGGGSTALGAVLKGGFGMLFESRRQKHELELARESRANENFIKLQAQLAEGGNGEFVSFSRRIIAFMGIGTLCVCVLFCTLFPSAEFLSITNAHGEGRTEWFF
Ga0209645_10079736F037741AGGMPELGLRLTIGEVDADSIIGPIGGGPIIDGVIQAESGAFLQVEAGQYLAFDE
Ga0209645_10079737F058164N/AMGLASVNVLNSMGANGCVYVNGTSAVNGNFVAVQFTEASVIGALTGIMENSADLIADGTSFGAGQVIYVPFTSITLTSGAAILYKGSV
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