Scaffold Ga0209645_1011675

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1011675

Scaffold Ga0209645_1011675

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1011675 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3511
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035332	Metagenome	172	Y
F036932	Metagenome	169	Y
F092693	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_101167511	F035332	AGGA	MKMTLVVDTDDIKGLEASHKMITTLCGQYDARVDSRGMDKRFGKIAFIKALRSYMKNQMDAVESGDIELKDMRNLRDAKHFADAIWNGWRP
Ga0209645_10116754	F092693	AGGAG	MIIWILSGSYEGEQFASSHLTEKGAVLAAIADVLQLLGVEDKEDAQRVMSNDISGKGLMEGDEPIEWDLCKLREMPRNELWGIFHEWAEYTWDNSQGYSIEVIKTKLAA
Ga0209645_10116757	F036932	GAGG	VRTLKATPAFKVGDFVRVKEGTHQEGIPTSRMGHIRGFANGARRYNDKGVTVEPTDQYKVYMTNGVTLKFHEMFLELVDEEG

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