NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1021013

Scaffold Ga0209645_1021013


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1021013 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2486
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F015990Metagenome250N
F027830Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10210133F002399AGGAGGMASNYRSHKSVIGKMRRKYGLKDNVDPKKAEIAMTPDDWKIFSEALTFPNGKPSKREDK
Ga0209645_10210134F004603AGGAMIFSININGNIIDWCYNLDCQDKQFHRTWIPKLRDIQIITKDLGDLTVSETKKIILEDIQPDIQMVRDHNNKVARERRQRL
Ga0209645_10210135F027830AGGAGGMSFDMALAKYAAHYRDRGFGTELDYISDKHSRATGEGGYLLRDVNDRHIAYVTKDGKVQA
Ga0209645_10210137F015990AGGAGGMTGKGSGRRKEDINKIRNNWDSVFGKKKKKQITEVTIEFTMEGNPTLYDMKKEVEKMCKENKLVCTTVTKHINA
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