NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1027147

Scaffold Ga0209645_1027147


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1027147 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2131
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F066824Metagenome / Metatranscriptome126N
F084306Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10271473F002594GGAMAKIPTTRLNSAPRDYNEVEFDQLIEDLQDMIKILNSTYPTDISNEQDRKEFFLSG
Ga0209645_10271474F084306GGAGGMSHLEQKLNQKRNLEAQWASKFIANGAVTIEMVQIQKKINEVAQEIKEDSEKKD
Ga0209645_10271475F066824N/AMLVHFKFYRCGYFAEGLVEKNNFDDAAEALWKEHPKTFKWTDIQGPDNENRLTLEEWNEPSGTKTEPEAEPRGAVGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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