Scaffold Ga0209645_1042022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1042022

Scaffold Ga0209645_1042022

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1042022 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1637
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F020878	Metagenome	221	N
F026922	Metagenome	196	Y
F042856	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10420223	F042856	N/A	MNKQLQQQQNLRELARLTFLNLMSANGVMAKTIIRNYKQRQQKESYERDGTNRKICSEYS
Ga0209645_10420224	F026922	N/A	MEYLKIKTKDVKRYIGYYEDWYNTFDKDGYKYVIEQLDFDDKYYNDLLSSLHNFVKGGEFYPIKVK
Ga0209645_10420225	F020878	AGGGGG	MIIKLFGKQITINNKKWKQDLAAWSLYYRTEIIIAVASFILGAIIF
Ga0209645_10420227	F002146	AGG	MIKNILNFLDYVLFLGMFYLMYLGLKHGAAIEQLIIKLKEGAI

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