Scaffold Ga0209645_1103423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209645_1103423

Scaffold Ga0209645_1103423

Overview

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1103423 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	921
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001523	Metagenome / Metatranscriptome	678	Y
F003364	Metagenome / Metatranscriptome	491	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_11034231	F001523	N/A	VKCLLHIGQTRLSGVRQRQSLHQRNGKKDHKMKTTTMAITIAAAMGFLAIAATKAASMDFSVAGQTLSIGADSDINYTTGVEEWEWELTPSAGLTAMGIGLSVATDIDMLELDEGDIFQGLDFTADYTLPSTNISLYTEVSTDSDLEFGDVTVGATVSF
Ga0209645_11034232	F003364	N/A	MWIAFMLLCSTPAALSCEVMAKTESTFPTEEACAQEAIIVARYFQQQGYLAIPECQKIKMGVSL

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