Scaffold Ga0209512_1011714

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209512_1011714

Scaffold Ga0209512_1011714

Overview

Basic Information
Taxon OID	3300025153 Open in IMG/M
Scaffold ID	Ga0209512_1011714 Open in IMG/M
Source Dataset Name	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6080
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Borup Fiord, Nunavut, Canada
Coordinates	Lat. (^o)	81.017	Long. (^o)	-81.583	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069716	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209512_10117141	F069716	GGAG	MLTNRNQPIIAGLLSLGIVGFAGATALQFNDRIEYKIGNRIETAPSWLVPAKAEFKGVQRGYGGIKILLALLATGGMVTVMLIARKESELEPTRQRIKCYQQKAYEFDFAAESAYQMAQTQQRYNTLLKADGVAFEGEIEQAYMESLGIDPNQQQPVLTGTATLDSVTNPSDKVES

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