Scaffold Ga0209399_10254246

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209399_10254246

Scaffold Ga0209399_10254246

Overview

Basic Information
Taxon OID	3300025157 Open in IMG/M
Scaffold ID	Ga0209399_10254246 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	696
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Beatty, NV
Coordinates	Lat. (^o)	36.96	Long. (^o)	-116.72	Alt. (m)		Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024604	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209399_102542461	F024604	N/A	LLDPRLPLERPPPARAQASALQSARANKATTTQAITSLSQGLVDGIITSAPFTFRLMKDGYRELVGPKEFKQAGVEFLIQGLVARRSYAAKHREVVIAMIKATMEGTRQIFVNEAQAKAVLAKYTRQSDPEILRQTYKFALDIFVKDPTVTPGSIQPIVQQSAQFNLVDAKLAASTPISAYYDNSYVDELKRTGWLAELWR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.