Scaffold Ga0209109_10016050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209109_10016050

Scaffold Ga0209109_10016050

Overview

Basic Information
Taxon OID	3300025160 Open in IMG/M
Scaffold ID	Ga0209109_10016050 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4033
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003207	Metagenome / Metatranscriptome	501	Y
F003485	Metagenome / Metatranscriptome	484	Y
F007547	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209109_100160502	F007547	GGAGG	MQPLPPQLELPEGDRFTLPTVSAVRELVPPGGQFPAHMVLMMICGKELWVPLDREIARQMANILAPFRE
Ga0209109_100160503	F003485	GAG	MAAKVSLSVEVQGDDIVVTLPGTSYVVTHYRATAFPQQLLTKSHSGREVEGAPMTQAEFHARAWKAANAKARELGWIV
Ga0209109_100160504	F003207	GGAG	VSAPDRFIAWCKQEQASIEQEVELLVSGKVRTGEDIGAGWVDTTDESIERAKARLAQLNELLTEAGTATVVKRDAL

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