NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209410_1010594

Scaffold Ga0209410_1010594


Overview

Basic Information
Taxon OID3300025163 Open in IMG/M
Scaffold IDGa0209410_1010594 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4141
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035145Metagenome172Y
F049343Metagenome146Y
F050065Metagenome145Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209410_10105941F066330AGGGGGMAEEEKGKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIRKAVEEVLQQK
Ga0209410_101059410F050065GGAMNMLKATASMEQIILAITYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPKNNNN
Ga0209410_101059411F035145GGAGMLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTIEREFITQQSTLKALIEALRGVEEVVRNDERRTERRDM
Ga0209410_101059413F049343AGGGGGMEWGRLRDKLRKGEWHAFSAVCFLAGVVAGKGITVLGRAEPVFALTAVGAVLLAYWLALLTATIIAEIKEAPKTI

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