Scaffold Ga0209521_10004207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209521_10004207

Scaffold Ga0209521_10004207

Overview

Basic Information
Taxon OID	3300025164 Open in IMG/M
Scaffold ID	Ga0209521_10004207 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11517
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014247	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209521_100042079	F014247	AGG	MSSFRNSLFWSGLWIFTVATSLASMIFMAWAFYVETTGRGALFIEPNRVIAAAELATVATGMVALLILFLKSLQSGE

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