NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209521_10081425

Scaffold Ga0209521_10081425


Overview

Basic Information
Taxon OID3300025164 Open in IMG/M
Scaffold IDGa0209521_10081425 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 19ft 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2111
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019111Metagenome231Y
F039071Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209521_100814251F039071N/ARQEAGQGERGHLLANIRRLTTIVLDKLEQGSKEGTLDQAQIRLLGSIVMRSLGLWHETLNPKPRRHPRRELRETEDSLAAES
Ga0209521_100814252F019111GGAMEEDEPDENELRSMIIEQLEQSLAMSREMMTNQKLDPKTRERWTQLHTNTAQVLNQILRDKQYKEWEKRLKELEAAGHIPRSKLSSSDLSSNDNPRDVSL

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