NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000168

Scaffold Ga0209337_1000168


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000168 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52386
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (10.34%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005351Metagenome / Metatranscriptome403Y
F016813Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10001686F005351N/AMYNPNSPSNWSWSKAFKEMEKTVNRAELELQITNHQHKYDGGVKLFTELSKDKKDLHYEILTQIL
Ga0209337_10001687F016813N/AMLDLTKLPILEKNHEWLMDNEDYSELFERLNYNTCDYLIVYSYSTDFLEVITELVSFNIEFSHHSCHLSDESYLLIETRQ

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