NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000175

Scaffold Ga0209337_1000175


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000175 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51976
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (30.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F033222Metagenome / Metatranscriptome178Y
F036473Metagenome / Metatranscriptome170Y
F038415Metagenome / Metatranscriptome166Y
F070664Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100017512F038415N/AMRKVIDFITSYKKEIGGLLRHVATIAGGVMIAKGSLTTDSFAMILGASSSIIGTGWSFVNKATHKKEIHVALSTDPVSGEQTREFDAVDKVWKSAD
Ga0209337_100017524F070664N/AMNKNMTYYAIATQQGSSVKLEIRETVKGNIVKNYRYPGKVEGSPVISGDTVSFTIAIGTYKKMIIQNIKTGSKVERPL
Ga0209337_100017543F036473N/AMIVGLSNLKSMLLSKVCEVKFARRNTKPGRPASRRMLCTNNVQLLNSVEGRTVLNYQPPRQAPAYNPNQENLIITWDILMQGFRTINCDTVDLISTLDADDTFWSYLNEKISPMSAGEKMAFMNT
Ga0209337_100017544F016734GGAGMNSSQQKKYDAALDKMDLTDSQRDAFDHSVKKGLIDLDTYQDTDCFSLHGYKLSQVMDDIVLAQYVDLDESGTSVKRGSVYIPLAHVKRTWRMARVILAGPKCQFAKPNDIVCFPDDKGIKVDNLSVAGFDSSLRNCLFLNEDRFFGICEELNRDDSRAE
Ga0209337_10001756F033222GGAMNTIGLYDTTIMGYRVKIQPYKISIFDDENEILGENVPNKIVKYIIDEGFCDSWLTSAQGIKVNVYRQKQC
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