NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209337_1001724

Scaffold Ga0209337_1001724


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1001724 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16405
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (93.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022285Metagenome215Y
F101893Metagenome102N
F101914Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100172416F101893AGGAMSYIIIQMENPMDLENISVLPDEQDLKIKQFLSEEDAVRFLVKHGMEEELDFDAKIVRLH
Ga0209337_100172420F022285AGGAGMVKIKQPQTLVKWGHEDVTILELFKKLDEFVCDPVRNLYELDGDMYLSDYRKLCDAQWRIKIALDNYRGDKE
Ga0209337_100172421F101914AGGAGMTTNWTCSNCGCVHWDGLKPISCIMCNNDEFLDGPEKFYTGKLDKQTNYVKEKDNGED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.