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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025168 Open in IMG/M |
| Scaffold ID | Ga0209337_1002369 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13674 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (66.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015413 | Metagenome / Metatranscriptome | 255 | Y |
| F024225 | Metagenome | 207 | Y |
| F029595 | Metagenome | 188 | Y |
| F036475 | Metagenome | 170 | N |
| F037479 | Metagenome / Metatranscriptome | 168 | Y |
| F071255 | Metagenome / Metatranscriptome | 122 | Y |
| F104046 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209337_100236910 | F029595 | AGGA | MKCFESPSGMKDPMMWHKRQSVRDFIRQKPMFSQLMQASKQCMQANPHLKNDVKGAIQCETIHPQTLSNFSNFTFHTHPHNIPYPSQTDKNTTKELKKKYLLIGVVPQNKTYVFSDADNFESAIATI |
| Ga0209337_100236912 | F015413 | N/A | MDSLSLEKQVNDLLATKFEQPEFEQVNLKGIFGKDMLIGSAGTALSVQIGNIVGKFLPIGQLPTGTSSILAGILMQKFGGNNSTLKKLSEGIIQGGIATAMTPFTSGLIPAQFSQEVKEVVQEAEINPLTKGVMW |
| Ga0209337_100236917 | F104046 | AGGA | MLNKTVQWNTHTLSGGVPVFAFNTKQKYAPQRMDNVLDQGQFDTINPNIFRGARTTDGQLNFKQYGYEQKRMFSQSYHGPRNNDSWENYVNWAGQ |
| Ga0209337_100236919 | F037479 | GAGG | MKFLGMWNLGGGGTEVITGVANEQLPSHTENICFNEKVLFSGEFTNLSRTLVHVTLNGFGSAQSFHRHDLRAYESFVVKNLPLASVSIYVNAGEDIGFHGMGSLVQAEDEDEYAICLAKATMNEKLPNSPQFNTDDYVRVTQAAAATVDLFVSGADEDFAVYKITASVDAANVIDIFWTDSANANVEFIGQLRFASEGTFVYDFDNSFLRNPNRQGGKLRMSTSTAANTTVDVIGHEVHAGQ |
| Ga0209337_10023693 | F036475 | N/A | MQKLTLEILNDCMSIVEKRVSNPVYKKVIKTMGYPYARKEILRTSDAELKKDMNLVYNRLKIHFNKKALKDEIDFSNGISDIKVPKFLSKQVGDYF |
| Ga0209337_10023694 | F024225 | AGTAGG | LKINFTTKKIEKKLYEKSILTYIYDHYLFNDYKKLVEQDKWEINVRTLADFKWNFYDKNIKNLSKKMPHGVTGDNVIECYVTDENNRMYYLQNMMVICHELSHMLLKIYYPQIRGTLTYDDTWGKAGDERNFFSTEIHNRVYEGKTRRFTTWHNGSEFFFYGVDIDDLTNQRNQDNGL |
| Ga0209337_10023696 | F071255 | N/A | MTDETDRFSELSNTIKEGLSEEFSTIKGSINELSKNMNLNTKETEGMTSVSEFVEHLNTCENDECEIHQAQNTANNNNYMKGFLLGAKFGKQKRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |