NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209337_1005452

Scaffold Ga0209337_1005452


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1005452 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8677
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F080238Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10054524F080238N/AMDNKETEFEKMLRELEKMPVPERTCNIDDDNCESCSG
Ga0209337_10054526F020903N/AMSDQLDIFGFDESQLEEVKIDNPNTLAEVFNNIAADMVFCLKQSVQKEKLTYKGGLLNSIKMPVKMFGFRMIATLFMADYYDYVNKGVRGIGGNRKSGNLKGQGWEIKAPNSPYQFKRGPSVSHIRQWAKSKGLNEYAVRTSIAHKGTRPRFFFDNCMQETFYGEAFNRFKTDIRIVSGERIAKGLKEILE
Ga0209337_10054527F029278N/AMNITIPTKWEDVTIGNYINLRPILNTELKPIERVVNILAVLTGEKKEVIKNISLDQYKTIKEKMSFLETDLPKELKEKRFKIGAQWYKFELKAQNLAFGEYINMMEILQSAKDDQEVIFNNLHRILTTICRPIEKKFFRWKDIKVDGELLRHTQKNFFDNMPMTIAYPIGVFFYTHWESLTEIIKTCLMEEAEKLKREAEIEIALIKDGAGGEH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.