NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1010864

Scaffold Ga0209337_1010864


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1010864 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5729
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002743Metagenome / Metatranscriptome533Y
F015479Metagenome254Y
F020715Metagenome222Y
F044543Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_101086413F015479N/AMKILMIIATGAVVTFPMDERVTADCFEQGHSILQKISTYQGSGTDQGWYLKGKPIQVAGWYCKY
Ga0209337_101086420F002743GGAMNDEDKVYRDLLDHVLHLLDHKLPVVMVAASLMAIAQRLYRTHLSEKDYERIMKIAYEINVEPYDIKKGTLH
Ga0209337_10108647F020715N/AMTKKLSSTRNPIARLLKHFTPQRFKDKTKYNRKNDGQIWKRYFWKGL
Ga0209337_10108649F044543N/AMSRKIILNIKGGSKKQYSTLVLELDLISKSWSKFGVSISLPGQEKTIAWGNRKHDDKNTAKISN
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