NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1015606

Scaffold Ga0209337_1015606


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1015606 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4592
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F027524Metagenome194N
F103288Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10156061F025412N/AMNYRELKWGALKSYATKLGINTKGMTKEVLLEWLDAMPDVAHGIEELKPFKGIKQHHPLFDEVEPYLPYLKAYKKLNAISPNPQVNEAIATLFLKYIEQDKNVRLNLGCGICKQRYYQRMIAGYNRL
Ga0209337_10156062F103288N/AMSIIIISILAVLAWTSLFKQTFTTKEGFKYVYEPISKILYTLDFKPLNCAYCLSFWIGLAFSIVLLDISYMVIFLYFARQN
Ga0209337_10156063F027524N/AVNEEFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTHELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLRESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK
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