NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1034278

Scaffold Ga0209337_1034278


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1034278 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2778
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047724Metagenome149N
F057669Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10342781F047724N/AKNINYYRQVFSKDDWAIGLESSDKDYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEARFKQAVLEICRTQVLRDVGEDELKGQKGGADVLAYDLRDEFMANMKDEVFYTQKMRTIVLDPHAELQISAENLTDWDAVKA
Ga0209337_10342785F057669N/AMTKITPSEHWNGFSFMFSNGWSISIQQSDSHNCKVGHTAEVAIFDSEDNWYGYDEEKHDIFVPDEETYVNNYLNADDIAKIISIISQEKIDIRTSK
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