NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1040880

Scaffold Ga0209337_1040880


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1040880 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2482
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009562Metagenome / Metatranscriptome316Y
F014672Metagenome261Y
F057769Metagenome / Metatranscriptome136Y
F058454Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10408801F014672N/AVFTNEREQALLVEKFKTGDLVKIRDGTHATEIPDHRVGMIIERGEASGNYTESYTVIFIGSNVQLKFHEMFLEHFTSS
Ga0209337_10408802F009562AGGAGMLSIPLIRTDDDSNLTPIERTAMACEQVITAMMMAATMADPLVTAAEREVYTTLSVATIVPAEA
Ga0209337_10408805F058454GGAGGMKVGDLVSYAFQASRERKGQSFDVGLVVETGKYTGNTDVKVLWMGPGAAAPYPVTQQSDHLRLLTSS
Ga0209337_10408809F057769AGGAGMIKVGSMVTNVGFIQGRNNSNHGLVISLMADGKIARVFWASTQKSGFCSVVDLKVVA
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