Scaffold Ga0209824_10157696

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209824_10157696

Scaffold Ga0209824_10157696

Overview

Basic Information
Taxon OID	3300025173 Open in IMG/M
Scaffold ID	Ga0209824_10157696 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	815
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Netherlands
Coordinates	Lat. (^o)	52.2278	Long. (^o)	5.919	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024517	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209824_101576962	F024517	N/A	MHTLHTVHGRNALVKRNLRCHTRRVPATKTRKEISYPLSFRVALSQVEEIDGAVVREKRKRRSDLLEAIWEVAWSDYRKSGSLIAYGEGKRSRKYTRRISEELQDQLYTALETILERAPSAVIEEVARKLTQWAGKYGEEK

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