NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207883_1036152

Scaffold Ga0207883_1036152


Overview

Basic Information
Taxon OID3300025216 Open in IMG/M
Scaffold IDGa0207883_1036152 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)612
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.064Long. (o)-133.3152Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0207883_10361521F042083AGGAGMARYRKPAMPHPSITGMAAGLSVAQYLNQGTKTGNGPVSGVISEAVGGNLQGAFTELSQNAIALSTSTTGRAVLSSAIVLATAGGLARKFFPSVKLGGTKLYF

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