Scaffold Ga0208336_1003684

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208336_1003684

Scaffold Ga0208336_1003684

Overview

Basic Information
Taxon OID	3300025221 Open in IMG/M
Scaffold ID	Ga0208336_1003684 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3860
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	East of Porto Seguro, South Atlantic Ocean
Coordinates	Lat. (^o)	-15.83	Long. (^o)	-33.41	Alt. (m)		Depth (m)	4003.17
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016015	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208336_10036845	F016015	N/A	MINVNKFENRIVKFKRIDSAGNESDKEAEVRRMDYDQAEDIPRSVTARLVDPLNFVITLGYDKSKKKFSGPLGTDIWESNFDIDDFITSSKMGTADRYMRSPKRNRARF

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