Basic Information | |
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Taxon OID | 3300025226 Open in IMG/M |
Scaffold ID | Ga0209674_100007 Open in IMG/M |
Source Dataset Name | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1077082 |
Total Scaffold Genes | 1040 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 690 (66.35%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 35.6667 | Long. (o) | -78.5097 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040130 | Metagenome / Metatranscriptome | 162 | Y |
F062899 | Metagenome / Metatranscriptome | 130 | Y |
F090602 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209674_1000071026 | F090602 | GAG | MQQHLMSAPAARVEWELLPSLLNRVSGRRLRSQPAWSETLPSELDLLEPSDPFEEVLPGLQMREVREPDIFQIFFG |
Ga0209674_100007784 | F062899 | GGAG | MNPLAANRTAARPQRPLPGVSRHCSFVEDLNWPAPRTPDRKPARPTEVWVPGPNGQWDGVTPTLQ |
Ga0209674_100007831 | F040130 | GAGG | MPGPVKRAVAIMAGVVLGMVIAAGASPWRELFRKTEPVPPAPIQRERAPDTRV |
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