Scaffold Ga0207884_1037315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207884_1037315

Scaffold Ga0207884_1037315

Overview

Basic Information
Taxon OID	3300025236 Open in IMG/M
Scaffold ID	Ga0207884_1037315 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	824
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	29.1475	Long. (^o)	-23.6838	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057438	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207884_10373152	F057438	AGGA	MKKFTIEVSHATTAQLSTIALELKIMSNGWTKHGPRIMIDGKPLEAPSLTMEVPSSKPQASSSRHEKDTIM

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