NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208830_1017007

Scaffold Ga0208830_1017007


Overview

Basic Information
Taxon OID3300025238 Open in IMG/M
Scaffold IDGa0208830_1017007 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP2634 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1559
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameNortheast of Antigua and Barbuda, North Atlantic Ocean
CoordinatesLat. (o)20.0Long. (o)-52.63Alt. (m)Depth (m)4002.69
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005832Metagenome / Metatranscriptome389Y
F089043Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208830_10170071F089043N/APKFKHARDYALTRIKTDGTITQSEDVVTLQGADVTNHLVLENEDTLFTENHSNTAASEMGYFIIGLEDGTKTFPTKYANALPTPARFISLKYQNGFSTNVSYASSNSEFTVQSNAEIGFTEGTVDGESYELTYTDTSWPTTNGSSYWFMNTVENSPVVNDQSEILIFKTTSEGTNFKVHFTIRAQKVNKHMAVYTGSAGTSTAASVLNTIDGWGDAFETGTGNYYDGYFYVTIYNSTDSDRDDQVVVFSDQNNASSTTLDFNGNAFKHRDDPDDPDTEISILNEEALTNAYSNGDFTLLTSI
Ga0208830_10170073F005832N/AVPQQLWWGDNVSKEGIWQDSDGMKDSEMVEKWTKTLHTVEYAVEQLKHQKTALIKKREDIVNSKETKNG
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