NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209258_100506

Scaffold Ga0209258_100506


Overview

Basic Information
Taxon OID3300025242 Open in IMG/M
Scaffold IDGa0209258_100506 Open in IMG/M
Source Dataset NameArabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37820
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (68.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.6667Long. (o)-78.5097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077376Metagenome / Metatranscriptome117Y
F092337Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209258_10050624F077376AGGAMTTYVLSLTGDEEKAANATHWARFRRAKLISVSRQADQRMPDAGRDSIVIAEHGAGDRRATSCNPSTHDPAALAALLVRTLDIQDGTGVVLADFDNEEFAADVVARIAALGRRVTCTGQLRDFSFGARVRPLFARAA
Ga0209258_1005069F092337N/AMRATDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH

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