NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208335_1018587

Scaffold Ga0208335_1018587


Overview

Basic Information
Taxon OID3300025243 Open in IMG/M
Scaffold IDGa0208335_1018587 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1132
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of Cape Town, South Africa, South Atlantic Ocean
CoordinatesLat. (o)-32.81Long. (o)12.77Alt. (m)Depth (m)3901.64
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035337Metagenome172N
F047117Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0208335_10185872F035337AGGAGMEYNLPVEITWNEEDQATIDIICDACEKRYIILTNDISNLEQCSFCGHYLEVSTEDIHEFQEDSWD
Ga0208335_10185873F047117N/AKDITIEEGQEFANVKQQQINRKQMRITASFHMKHGLYKKPEFKFFQSIGMFNFFQGFKSDDLDLGVYHLYWDRDAENTIEYYDPKTGERTNNIKGDWRERWYDPGEEIKPVEMDNPYRPDPAKMAKWWMETQGSIQAKIMMKQQEKAETEDEENRPWHHIPKPQWEN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.