Scaffold Ga0208570_1004974

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208570_1004974

Scaffold Ga0208570_1004974

Overview

Basic Information
Taxon OID	3300025249 Open in IMG/M
Scaffold ID	Ga0208570_1004974 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Indian Ocean - MP1202 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2641
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Indian Ocean
Coordinates	Lat. (^o)	-30.33	Long. (^o)	103.31	Alt. (m)		Depth (m)	4000.85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089571	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208570_10049742	F089571	AGGAG	MFIIYLDKENERKMLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYEQRNYIPLPEDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKNVSLKKLE

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