NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1004110

Scaffold Ga0208182_1004110


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1004110 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5075
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011121Metagenome / Metatranscriptome295Y
F087032Metagenome110N
F105893Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_100411011F105893AGGAMSEYNVKLDNMETYAYLMSHFKMTCYEAADEMKKRGLFDEHVATVHEGVSNYMELINKQE
Ga0208182_100411013F011121AGGGGGMPASPIRKEMDILPDNWVQLQKMMTPDQATGCYWSVWFDPPTNMKNGTAWLMCCAIGEDPSVNDSWCHAEEINGDCRNVLDVIKSVYGVSFHDSIWVEMGTGNELPSGSVAIGKGETWDG
Ga0208182_10041106F087032AGGGGGMTVEQVIRWFTDTDGYEFAEQIYGKTADDFHNDGYVAGKFRLMQKQPIHWMASLDPHNRKRLERAITKYKINV
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