NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1005150

Scaffold Ga0208182_1005150


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1005150 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4336
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024528Metagenome205Y
F038853Metagenome165N
F053553Metagenome141Y
F090253Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_100515012F038853AGGMSKDKFHFGATSVMREVPPGQSAVIKFNGKLEEIDTEWGPKMKYPILLFSHPSYESISKEGIETVWQSNSQAARDLAAALEQYPGSELSDAFHKKNWKLTRTEEGTYFLDVIL
Ga0208182_10051502F090253GAGMVARRRKPRRSRARKTFSVPLIETGAGLALLAQSDAGTHLKAMLEGNVQQGLSGLNSSIQANKNLMIKTLASAFIAKQVVRGFGGSKILARIGPVVARA
Ga0208182_10051503F038853AGGMSKDKFHFGATSVMREVPPGKTAVIMFNGKLEEIETEWGAKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDLATALEQGIKELSEAFHKNKWELTRTEEGTYFLDVIL
Ga0208182_10051505F053553AGGAGMDLGSLLVLLKLADQVGFTVSPKQTKPRPPTSKAGVRPDCGPGKKAILQFDQWVCVTDFD
Ga0208182_10051508F024528GGAGMPKKKLTKAQVKRKIKTCSNAMYDMILDKMGHANSDVPMSLPKLMEMHKLLQNAAKRMK
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