NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1006491

Scaffold Ga0208182_1006491


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1006491 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3672
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002426Metagenome560Y
F014552Metagenome262Y
F016735Metagenome245Y
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10064912F016735GGAMTDELFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLISEESNETLLASLSVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAKKLGDTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNQDKPKVTKLVHGKFGFD
Ga0208182_10064914F014552AGGAGGMAKKYSLGTPSLMRGLDKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHESYSSLPKEGRKLVWRTNCHVVRVTITDLFVDNDEQFIKDWYANTWTISCKEDGNIWVES
Ga0208182_10064916F042083AGGAGMARRKMAIPHPSITGMASGLAVANYLNQGTTVGAGPTLSKGVIKSTLDGNLNAAFSDLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI
Ga0208182_10064917F002426AGGAGMSGLQTRTYTLAGSALTAGTFTSVSQLLGSSQSTTNPEGMNRVVRISMSCSPDHTSATDGVSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTSETVDVAVSITYAP

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