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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025251 Open in IMG/M |
| Scaffold ID | Ga0208182_1006656 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3605 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002426 | Metagenome | 560 | Y |
| F014552 | Metagenome | 262 | Y |
| F016735 | Metagenome | 245 | Y |
| F042083 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208182_100665610 | F014552 | N/A | YSLGTPSLMRGLEKGQECEVKFLTDPKPVETEHGSKFDIQVLLLSHPHPDYSSLEKKGKRLTWRTNCHVVRVTIMDLFANEVEDFQKDWYELTWTISCREDGNIWVEA |
| Ga0208182_10066564 | F042083 | AGGAG | MARRKPAMPHPSITGMAAGLSVAQYLNQGTSKAFGKGVIDDVLGGDLSDGFRALTDNAVDLATSPSGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI |
| Ga0208182_10066565 | F002426 | AGGAG | MSGLQTRTYTLAGSALTAGTFTSISQLMGASQSTTNPEGMTKVVRISMSCSPDHTSATDGCSVFKYAGDGVSVQQIFAGPSWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP |
| Ga0208182_10066568 | F016735 | AGG | MTDATFAAIWILSFGLYLLIYTYWIPLRTQKKIEHWLMSEESDETLLASLSVITNKIREQALVDFEEFMIPQARKSAIDFWNGAMGNAAKELGKTEEGSQLSLLHSMTEELKDQPWFVQAAASKLIPVIQKAADNQGKEKVTKLAHGKFGFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |