Scaffold Ga0208182_1010624

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208182_1010624

Scaffold Ga0208182_1010624

Overview

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1010624 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2592
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)		Depth (m)	2535
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F014552	Metagenome	262	Y
F077162	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10106243	F002426	AGGAG	MAGLQTRTYSLAGQSLTAGTFVAMSQLMGSTQSTTNPEGMTKVVRISLSATPQQDSATDGVSVFKFAGDGVSVQQIFAGPGWSVQAAGPLGGNDGQPVVIENSAGLFDIIPGNQIDFSVSCTTSETCDLAISITYAA
Ga0208182_10106245	F014552	N/A	MTDKSEDLKYSLGTPSLMRGLEKGQECEVKFLTDPKPVETEHGSKFDIQVLLLSHPHPDYSSLQKKGKRLTWRTNCHVVRVTIMDLFINEVEDFQKDWYELTWTISCREDGNIWVEA
Ga0208182_10106247	F077162	N/A	YVQAAASKLIPVIQKAADNQDKPKVTKLVHGKFGFD

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