NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1011453

Scaffold Ga0208182_1011453


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1011453 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010725Metagenome300Y
F014552Metagenome262Y
F016735Metagenome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10114531F014552N/AYSLGTPSLMRGLEKGQECEVKFLTDPKPVETEHGSKFDIQVLLLSHPHPDYSSLEKKGKRLTWRTNCHVVRVTIMDLFANEVEDFQKDWYQLTWTISCREDGNIWVEA
Ga0208182_10114533F016735N/AMTDEMFALVWVLSFGLYLLIYTYWIPLRTQKKIETWLMSEESDETLLASLSVITNKIREQALVDFEEFMIPQARKSAIDFWNGAMGNAAQKLGETEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNKPKEKVTKLAHGKFGFD
Ga0208182_10114536F010725N/ASNQAAGPLDGNNGQPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP
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