NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1012837

Scaffold Ga0208182_1012837


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1012837 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004651Metagenome / Metatranscriptome429Y
F021398Metagenome219Y
F067113Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10128372F004651AGGAGGMTTSETIQNHYGEAHAHLTDDELLAEMEHIGAVLDGFKNTLGHLEQEAYRRIEERGATSIPSETYICEMEIKRGYDQPSFAPLKEIFNEADLAKCLTPAHTEEVKVADKWATATVKSLSDKYGADHPRGNAPKVVQNARTESRGRLKFARRETR
Ga0208182_10128374F067113GGTGGMTSRMHRVECLDCGKVAIRLIPIDFPVYCLRCGSAALMWMPTA
Ga0208182_10128376F021398GGAGGMETKHPSLEFHCPATQEHISLAFGYLANEPMMPIFRGDELVAMLPREVLITALREGWGGTESGWWVDPANN
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