NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1013265

Scaffold Ga0208182_1013265


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1013265 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2226
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005551Metagenome397Y
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10132652F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAYQFTSGTPTASSLSVTLYFE
Ga0208182_10132654F005551GAGMTLGPSKSVSRAKDGKIYGWSGSYSLTSSAVTLLDYTNPSAFYLTRVTLGIDWSGISDGEVLSYTINVDDQALFVEKLVVLVNNIGIQPKMFEFIIPPNSTVKIQATESANNGAISCILTGYRV

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