Scaffold Ga0208182_1025201

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208182_1025201

Scaffold Ga0208182_1025201

Overview

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1025201 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1420
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)		Depth (m)	2535
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F010737	Metagenome	300	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10252012	F005551	GAG	MTLGPSKSVSRAKDGKIYGWSGSYGLTSSAVTLLDYTNPSAFYLTRVTLGIDWSGISAGEVLSYTINVDNQALFVEKLVVASANIGQQPKMYEFIIPPNSTVKVQATESANNGAISCILTGYRV
Ga0208182_10252014	F010737	N/A	STPTDKTYFSLTDNMSSSSLGNIQTPQGSTRISRIDVAMDAPDTKGVVLACRLLGSNMSEQNLSLAGSCGDVADAGGTAQFNMIPTNFSVAGVNNIDLQVAFQFTSGTPTASSLSVTLYF

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