NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209677_102377

Scaffold Ga0209677_102377


Overview

Basic Information
Taxon OID3300025253 Open in IMG/M
Scaffold IDGa0209677_102377 Open in IMG/M
Source Dataset NameArabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7181
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.6667Long. (o)-78.5097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012876Metagenome / Metatranscriptome276Y
F049748Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209677_1023776F012876AGGAGMTKTTAQFAALALSALMTLGTVAGVGSIANAQYAKADSLAMAPYGQAHVAVQHVTVVGRRANA
Ga0209677_1023778F049748GAGGMDIKQDPNSIPNFNSGGRVGELQRNEPEQTQSSVELDPTAGGDGAASEAAQHESLLGDGEDPAAGKTPDRSTTGAGAIDGLVGAP

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