Scaffold Ga0207899_1052991

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207899_1052991

Scaffold Ga0207899_1052991

Overview

Basic Information
Taxon OID	3300025257 Open in IMG/M
Scaffold ID	Ga0207899_1052991 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	635
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.3272	Long. (^o)	-52.639	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015264	Metagenome / Metatranscriptome	256	Y
F075338	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207899_10529911	F075338	GGAGG	MINKFYISDAKVLDERMGIVEAYVNTMGIRDADGDIIDPAAFNASIKSNLPIPVLA
Ga0207899_10529912	F015264	N/A	SVLVQAPARAAIIHRTTNRAIQRGVTIALENGYSIAQLARGVPTADPPFPGLRSILTETEARSRLIARTEVMRTQNLTSVGFFKEQGFSYVRADDIDGDPDDNYIDPGDPYGRTCAERNGQIYTVEDAQNIDDHPNGTLNWQPMPRNYKPEETLV

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