NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207876_1011292

Scaffold Ga0207876_1011292


Overview

Basic Information
Taxon OID3300025259 Open in IMG/M
Scaffold IDGa0207876_1011292 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1454
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)37.133Long. (o)-17.5322Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003481Metagenome484Y
F006447Metagenome / Metatranscriptome373Y
F059343Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0207876_10112921F003481N/AMDDLREELRLAREELARLKTTEDKSDKIQMTSSDIVRLTIAAPVVFVWLFLGSRIIISATTSQAVLEHIEPLLLALSILTIPVTAILSSLFRVDGNGK
Ga0207876_10112922F006447GGAMTLFEKICRMVGDRRIPSFRMPAFRWFTVGFANKHVTTVVVLTIVVSGLAVAVGLYFAVRDVMSSTYNWPEPAEYQVTEAGLQTMGQKNPNYPDGTESQTLSIRLADGARISNLSISGTDLGRAGISRALDISPLTSAVTGTTAYLFVGNLTMTGSAFPTLKMEQSEVGTLTVGLLCDGNTFSPTITNTIPDQVLTSKRLSSVYSVSDAIVDRIQIHITGTSGAYIDQLTISDVQAWNGEAYFSRLKVGNLTMNNTSQIGDGSGVDSASCYFDSSVLVRNAANTIQDKPIKVQ
Ga0207876_10112923F059343AGGVKHLGLIGAVLPLVLLAIGMIGWVLTVRNDVTDAVKQITAVQEEI
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Institute for Fundamental Biomedical Research
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