NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207876_1052151

Scaffold Ga0207876_1052151


Overview

Basic Information
Taxon OID3300025259 Open in IMG/M
Scaffold IDGa0207876_1052151 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)37.133Long. (o)-17.5322Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055194Metagenome139Y
F077783Metagenome117Y
F081421Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0207876_10521511F077783N/AFLGDNLCMKPVQSRTLYDSWYECSRAAHKESLQILSKIGYKEVNDGKLGTRYVCRINDTV
Ga0207876_10521512F055194N/AMIKEIIIIALLINGELSLVSFPFEGDMHECFVYGNELREELSTHRWVEEDIMKSGWYLNEGIGTFQGFICKN
Ga0207876_10521513F081421N/AWANLLIELNLVKKAWRRFGPVIDIKAKNFDQIIKWGSRKHDSIDD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.