Scaffold Ga0208029_1016783

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208029_1016783

Scaffold Ga0208029_1016783

Overview

Basic Information
Taxon OID	3300025264 Open in IMG/M
Scaffold ID	Ga0208029_1016783 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1895
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)		Depth (m)	2851
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022083	Metagenome / Metatranscriptome	216	Y
F040340	Metagenome / Metatranscriptome	162	Y
F089036	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10167834	F089036	AGG	MKKIDLQGAILAGIGTLIVGLTGWLMSTTLGVDKDQDVMEVRLDHAEENYDKLRLDSPAHSMDTCPVCMHMKLGSK
Ga0208029_10167835	F040340	GGA	MTWFYLHCVIAIVIVIADARGTLEPTIKKWEEKLGIPVPEEVDAEADIREQQSKH
Ga0208029_10167836	F022083	N/A	MLLQAIGFIAAMVYGYGQLNTRLQFVEHQAEMNEKTIKEMKSLQDAPIPSDVRQDEKLRRIEEEITRLRDGKGD

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