NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1000418

Scaffold Ga0208032_1000418


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1000418 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24735
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (90.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049760Metagenome146Y
F078926Metagenome116Y
F105507Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208032_100041817F049760AGGAGMSRDRVTVELEEYLLTQEEDYVSPEERKQEMADRAADEAMSTWDDE
Ga0208032_100041818F078926GGAMKVTIEFNEDDAQEIVELGQQLLEVVDRLEEVAKCLEILQDAK
Ga0208032_10004182F105507GGAGMAQCVKCNKLYSPARKLLGIDVCLVCGEFAASQVKHTVAPLNKSNYMLMSREDLKQLNPKRTT

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