NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1001385

Scaffold Ga0208032_1001385


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1001385 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10507
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F004192Metagenome / Metatranscriptome449Y
F037813Metagenome / Metatranscriptome167Y
F101868Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208032_100138512F003058N/AMNKIAEMVVDKIIARQKAYDEEFKAEIQGMVDDNDNIEFGTITEDEIISEELIKLKNRLLQLEDNEDYEAAGIVANKIKHLKNKYNL
Ga0208032_100138515F003647N/AMVMCEWTLADIKNRASNKAFAKVTILKLDIEDYKRSLKQGTYGGITYKEAEQVLEGYKTELQVWNYITELIEKQ
Ga0208032_100138516F037813N/AMNKLNLYEQLKPEYKTSISEKFKTREHSHDALIRALSDEYYFTEVKYGDAFDIMDSCDLDFLGDAFNKESQW
Ga0208032_100138521F101868N/AMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR
Ga0208032_10013859F004192N/AMKQDFNEWMANIKNIHYADNEQMLNAFEKLDNYEEI
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Institute for Fundamental Biomedical Research
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