NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1010905

Scaffold Ga0208032_1010905


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1010905 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2922
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F011527Metagenome290Y
F024421Metagenome206Y
F031263Metagenome183Y
F098074Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208032_101090511F098074AGGAGMVDQSQEEILEVQTKNKQIKYTSDTAKMFDEWLKQCPVVYYLSEQVDEEVNKIIKYTFDKKVRRK
Ga0208032_10109052F002594N/AMAKIPTTRLNSAPREYIADDFNQLIEDLQDMIKILNSTYPKDQNDERDRQVWFLGG
Ga0208032_10109053F024421AGGAGMSQALMSKLSHKRNLEAQWASELLANGEVTVQMVKISKEVKEVEREIKEVTENKD
Ga0208032_10109054F011527N/AMLVYFQFRRCGYYARGLVEADSLDAASKALWAEHVGTFKWEDQTKDQPEEANYLTIEEYKHEPSFNVEAEPQKEFRSPVG
Ga0208032_10109059F031263N/AMKTVILYLIVILNSGDDYELRRIISYKELTCFNWYEKNIIFRNNNSSKYNDLYVAGYICQYEKGE
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Institute for Fundamental Biomedical Research
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