NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208032_1021713

Scaffold Ga0208032_1021713


Overview

Basic Information
Taxon OID3300025266 Open in IMG/M
Scaffold IDGa0208032_1021713 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1834
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F011527Metagenome290Y
F024421Metagenome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0208032_10217133F002594N/AMAKIPTTRLNSAPKEYIADDFNQLIEDLQNMIKILNSTYPKDQNDEREKQVWFLGG
Ga0208032_10217134F024421AGGAGMSQALMSKLSHKRNLEAQWASELLANGEVTVQMVKISKEVKEVEREIKEVTEHKQ
Ga0208032_10217135F011527N/AMLVYFQFRRCGYYARGLVEADSVDSASKSLWTEPVGTFKWEDQTKDQPEEANYLTVEEYKHEPSFNVEAKPQKEFRSPVG
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